##FastQC	0.10.0
>>Basic Statistics	pass
#Measure	Value	
Filename	lane2_Index7_1.fq	
File type	Conventional base calls	
Encoding	Illumina 1.5	
Total Sequences	22985984	
Filtered Sequences	0	
Sequence length	90	
%GC	49	
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	32.14897548001426	33.0	31.0	34.0	31.0	34.0
2	32.397598118923256	34.0	31.0	34.0	31.0	34.0
3	32.41434193115248	34.0	31.0	34.0	30.0	34.0
4	36.05947872407812	37.0	35.0	37.0	35.0	37.0
5	35.940723007551036	37.0	35.0	37.0	35.0	37.0
6	35.91071746156266	37.0	35.0	37.0	35.0	37.0
7	35.856638245288956	37.0	35.0	37.0	35.0	37.0
8	35.85123543112185	37.0	35.0	37.0	35.0	37.0
9	37.56079483044972	39.0	37.0	39.0	35.0	39.0
10-14	37.72769933190592	39.2	37.2	39.4	34.2	39.4
15-19	38.79916033179176	40.0	38.0	41.0	34.6	41.0
20-24	38.660037055624855	40.0	38.0	41.0	34.0	41.0
25-29	38.427361700069056	40.0	38.0	41.0	33.8	41.0
30-34	38.12340836920447	40.0	37.6	41.0	33.0	41.0
35-39	37.82289135849046	40.0	37.0	41.0	33.0	41.0
40-44	37.61355707895733	39.8	36.6	41.0	32.2	41.0
45-49	37.185164820440136	39.0	35.6	41.0	31.0	41.0
50-54	36.854051860472886	39.0	35.0	40.6	31.0	41.0
55-59	36.61303251581485	38.4	35.0	40.4	31.0	41.0
60-64	35.914269843744776	37.2	34.4	40.0	30.0	41.0
65-69	35.1488100313652	35.8	34.0	39.2	29.2	41.0
70-74	34.295042831318426	35.0	33.4	37.8	28.8	40.2
75-79	33.16561482858424	34.8	32.4	36.2	27.4	39.0
80-84	32.85694182159006	35.0	33.0	35.4	27.4	37.2
85-89	32.04800159088252	35.0	32.6	35.0	26.4	36.2
90	31.56207378374578	35.0	32.0	35.0	25.0	36.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
10	1.0
11	13.0
12	116.0
13	933.0
14	4040.0
15	10018.0
16	17113.0
17	23209.0
18	29141.0
19	35282.0
20	43213.0
21	51910.0
22	60908.0
23	73355.0
24	90992.0
25	119802.0
26	159245.0
27	212306.0
28	280587.0
29	363984.0
30	464636.0
31	586912.0
32	743113.0
33	958314.0
34	1300176.0
35	1870205.0
36	2918706.0
37	4383827.0
38	5093762.0
39	3010631.0
40	79534.0
>>END_MODULE
>>Per base sequence content	fail
#Base	G	A	T	C
1	23.938802217858466	12.655984810859385	10.263966885632493	53.141246085649655
2	21.44850966571629	19.289998635690342	36.30695122732183	22.954540471271535
3	25.528069627125817	21.8461519854882	22.65009842519685	29.975679962189133
4	27.747630904119656	27.768086848054885	19.392865669792513	25.091416578032945
5	29.349511424005172	29.879943360266846	21.586806986379177	19.18373822934881
6	24.269937715087593	32.82932329544821	21.971693706912873	20.929045282551314
7	21.595508943974828	18.78292141565579	37.56383286133843	22.057736779030947
8	21.513962595640894	22.12829348528216	29.455367235964314	26.90237668311263
9	21.517491683787227	21.030032686226022	31.8945233484572	25.557952281529552
10-14	24.654669267302403	26.232079661564207	24.62014672238211	24.49310434875128
15-19	25.013709902065788	25.183324015318753	25.03795428692695	24.765011795688505
20-24	24.791901565171358	25.40716405479063	25.41436072299168	24.38657365704633
25-29	24.653186908022434	25.41128172230235	25.37802198934289	24.557509380332323
30-34	24.741383589627354	25.326651481827028	25.273225963421954	24.658738965123668
35-39	24.77090982713524	25.48154881418874	25.218194821584806	24.52934653709121
40-44	24.725877573184782	25.293085480059695	25.39689652603147	24.58414042072405
45-49	24.637190994661733	25.363296704771116	25.325826944420005	24.673685356147143
50-54	24.691190661194202	25.438741495681167	25.34572149775205	24.52434634537258
55-59	24.694815948641168	25.368377365281297	25.315139320385633	24.621667365691902
60-64	24.606171366115145	25.381035551751634	25.42321713569617	24.589575946437055
65-69	24.616149270531498	25.50145181438274	25.408661997253155	24.473736917832603
70-74	24.672054893068402	25.425251445624937	25.325193715125	24.577499946181664
75-79	24.65625375316917	25.38698162455334	25.40846553385705	24.54829908842044
80-84	24.593172972508615	25.525437860932342	25.427178548318047	24.454210618240996
85-89	24.672820269973677	25.50135758805267	25.35088688026154	24.474935261712112
90	24.41018279042169	25.609683889429974	25.553440281169316	24.42669303897902
>>END_MODULE
>>Per base GC content	fail
#Base	%GC
1	77.08004830350812
2	44.40305013698783
3	55.50374958931496
4	52.8390474821526
5	48.53324965335398
6	45.19898299763891
7	43.65324572300578
8	48.416339278753526
9	47.07544396531678
10-14	49.147773616053684
15-19	49.77872169775429
20-24	49.178475222217685
25-29	49.21069628835476
30-34	49.40012255475102
35-39	49.30025636422645
40-44	49.310017993908836
45-49	49.310876350808876
50-54	49.215537006566784
55-59	49.31648331433306
60-64	49.19574731255219
65-69	49.089886188364105
70-74	49.24955483925007
75-79	49.20455284158961
80-84	49.04738359074961
85-89	49.14775553168579
90	48.83687582940071
>>END_MODULE
>>Per sequence GC content	pass
#GC Content	Count
0	7.0
1	4.0
2	2.0
3	3.0
4	5.0
5	9.0
6	14.0
7	22.0
8	30.5
9	50.0
10	66.0
11	86.5
12	147.0
13	235.0
14	377.0
15	648.5
16	1159.5
17	1975.5
18	3347.0
19	5871.5
20	7507.0
21	10259.5
22	17386.0
23	28083.0
24	42954.0
25	63849.5
26	91210.0
27	125708.5
28	164150.5
29	204992.0
30	226877.0
31	249967.0
32	296761.5
33	348861.5
34	404792.0
35	457754.5
36	514049.5
37	577032.5
38	630811.0
39	676415.5
40	700357.0
41	714376.0
42	743825.5
43	772479.5
44	790263.0
45	798334.0
46	798035.5
47	792996.5
48	793893.5
49	795553.0
50	795086.0
51	786423.5
52	776233.5
53	763919.0
54	756660.5
55	756505.0
56	744228.5
57	726195.5
58	702211.5
59	672745.0
60	657822.0
61	639235.0
62	598849.5
63	549253.0
64	492121.5
65	435901.5
66	378108.5
67	317628.5
68	262838.0
69	211017.5
70	184414.0
71	161734.0
72	120140.0
73	85663.5
74	56973.0
75	34660.0
76	19653.5
77	10214.5
78	4660.5
79	1891.0
80	1058.0
81	783.5
82	358.0
83	163.0
84	89.0
85	47.0
86	33.0
87	25.0
88	13.5
89	7.0
90	6.0
91	4.5
92	3.5
93	3.0
94	2.0
95	1.5
96	0.5
97	0.0
98	0.0
99	0.0
100	0.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.4128298357816659
2	0.0
3	0.0
4	0.0
5	0.0
6	0.0
7	0.0024623701121518227
8	0.0
9	0.00200557000300705
10-14	0.001848082727282852
15-19	1.870705208878593E-4
20-24	0.0015113557896847052
25-29	0.0010058303355644901
30-34	0.0014748117809531235
35-39	0.0041407842274666165
40-44	0.0033124533628840947
45-49	0.0022422359643163416
50-54	0.002627688246889931
55-59	7.23049315617726E-4
60-64	5.377189856218468E-4
65-69	2.462370112151823E-4
70-74	0.0054520180645736115
75-79	0.0017810853779416187
80-84	0.0020803982113621936
85-89	0.002234405105302431
90	0.0011354745570170066
>>END_MODULE
>>Sequence Length Distribution	pass
#Length	Count
90	2.2985984E7
>>END_MODULE
>>Sequence Duplication Levels	fail
#Total Duplicate Percentage	56.17551332407082
#Duplication Level	Relative count
1	100.0
2	32.731082296671715
3	17.68906733364049
4	11.163035608503916
5	7.743697755545317
6	5.738388292854165
7	4.326553895434301
8	3.5257465060663904
9	2.8631606660962285
10++	33.61855240351917
>>END_MODULE
>>Overrepresented sequences	pass
>>END_MODULE
>>Kmer Content	warn
#Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
AAAAA	5752525	2.867641	5.079155	2
GAAGA	4967440	2.5892828	5.2230973	2
CCAGG	4795980	2.5730674	5.5167017	1
CCTGG	4799050	2.5601468	6.0341063	1
CTTCT	5062280	2.5535645	5.9059944	1
AAGAA	4961185	2.52896	5.1926627	2
CTGGA	4692765	2.4676008	9.292851	1
TCCAG	4538345	2.367646	5.4725156	2
CTGCT	4545630	2.3580291	5.2458553	1
CTCCT	4474870	2.3030784	7.4073086	1
CTGGG	4218050	2.2680266	8.705121	1
CAGGA	4224115	2.233809	5.611227	1
CTTCA	4387040	2.2255452	6.011657	1
CTCCA	4215000	2.181675	7.7618623	1
CCCAG	4061235	2.1617477	7.232525	1
CAGAA	4084235	2.112179	5.3025413	1
CTCTG	3937225	2.0424213	6.672715	1
CTGGC	3551375	1.8945502	5.50829	1
TGGAA	3610840	1.8715048	5.3695903	2
CTGAA	3637090	1.8702941	6.0351477	1
CTTTT	3687855	1.8232528	5.3383303	1
CTCAG	3339370	1.742143	6.441977	1
CTGAG	3311735	1.7414126	5.194907	1
CTTTG	3366625	1.7116787	5.395016	1
CTGGT	3209840	1.6782836	5.3260126	1
CTTGG	3150325	1.6471657	5.661005	1
>>END_MODULE
